Educational Resources: Solution Scattering

Reviews

  • Putnam C. D, Hammel M., Hura G.L. Tainer J.A. X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution. Q Rev Biophys  40, 191-285 (2007) Abstract
  • Blanchett, C.E. and  Svergun, D. Small Angle X-Ray Scattering on Biological Macromolecules and Nanocomposites in Solution. Ann Rev Phys Chem 64, 37-54 (2013) Abstract
  • Kikhney AG and  Svergun DI. A practical guide to small angle X-ray scattering (SAXS) of flexible and intrinsically disordered proteins. FEBS Lett 589, 2570-7(2015) Abstract
  • Hub, J.S.  Interpreting solution X-ray scattering data using molecular simulations.  Curr Opin Struct Biol 49,  18-26, (2018) Abstract
  • Brosey, C.A. , Tainer J.A.  Evolving SAXS versatility: solution X-ray scattering for macromolecular architecture, functional landscapes, and integrative structural biology
  • Curr  Opin Struct Biol 58 , 197-213, (2019) Abstract
  • Kirby, N. M. and  Cowieson, N. P. ,Time-resolved studies of dynamic biomolecules using small angle X-ray scattering. Curr Opin Struct Biol 28, 41–46 (2014) Abstract
  • Levantino, M., Yorke, B. A., Monteiro, D. C., Cammarata, M.,  Pearson, A. R. Using synchrotrons and XFELs for time-resolved X-ray crystallography and solution scattering experiments on biomolecules. Curr Opin Struct Biol 35, 41–48 (2015) Abstract
  • Lattmann, E. , Grant, T. ,  Snell. E. Biological Small Angle Scattering: Theory and Pracrice, , 2018

General

  • Cho,H.S.,  Dashdorj, N., Schotte, F., Graber, T., Henning, R., Anfinrud, P.  Protein Structural Dynamics in solution unveiled via 100ps time-resolved X-ray scattering  Proc Natl Acad Sci USA 107 (16), 7281-7286 (2010) Abstract

Photocaging

    • Monteiro, D. C. F., Amoah, E., Rogers, C. & Pearson, A. R. Using photocaging for fast time-resolved structural biology studies. Acta Crystallogr D Struct Biol 77, 1218–1232 (2021). Abstract

      Temperature Jump

        • Rimmerman D, Leshchev D, Hsu D.J., Hong J., Kosheleva .I, Chen LX. Direct Observation of Insulin Association Dynamics with Time-Resolved X-ray Scattering. J Phys Chem Lett 8, 4413-4418 (2017) Abstract
        • Thompson, M. C., Barad, B.A., Wolf, A., Cho, HS., Schotte, F., Schwarz, D., Anfinrud, P., Fraser, J.  Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme. Nat Chem 11, 1058–1066 (2019). Abstract

          pH Jump

            • Rimmerman, D, Leshchev D, Hsu D.J., Hong J., Kosheleva. I, Chen LX. Probing Cytochrome c Folding Transitions upon Phototriggered Environmental Perturbations Using Time-Resolved X-ray Scattering. J Phys Chem B 122, 5218–5224 (2018). Abstract

              Data Analysis

                • Cho, HS.,  Schotte, F., Dashdorj, N., Kyndt, J, Henning, R.and Anfinrud  P. Picosecond Photobiology: Watching a Signaling Protein Function in Real Time via Time-Resolved Small- and Wide-Angle X-ray Scattering J Am Chem Soc 138 , 8815-8823 (2016) Abstract
                • Thompson, M. C., Barad, B.A., Wolf, A., Cho, HS., Schotte, F., Schwarz, D., Anfinrud, P., Fraser, J.  Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme. Nat Chem 11, 1058–1066 (2019). Abstract
                • Kim,K., Muniyappan, S., Oang, K.Y., Kim, J.G., Nozawa, S., Sato, T., Koshihara, S., Henning, R., Kosheleva, I.,  Ki, H., Kim, Y.,  Kim,T.W.,  Kim, J., Adachi, S. and Ihee, H.   Direct Observation of Cooperative Protein Structural Dynamics of Homodimeric Hemoglobin from 100 ps to 10 ms with Pump–Probe X-ray Solution Scattering J Am Chem Soc 134 , 7001-7008  (2012) Abstract

                  Molecular Dynamics Simulations

                    • Takala, H.,  Björling, A.,  Berntsson, O., Lehtivuori, H., Niebling,S., Hoernke, M., Kosheleva,I.,  Henning, R., Menzel, A., Ihalainen, J., Westenhoff , S., Signal amplification and transduction in phytochrome photosensors. Nature 509, 245-248 (2014). Abstract
                    • Hsu, D.,  Leshchev, D., Kosheleva, I., Kohlstedt, K.L.,  ChenLX. Unfolding bovine α-lactalbumin with T-jump: Characterizing disordered intermediates via time-resolved x-ray solution scattering and molecular dynamics simulations. J Chem Phys 154 : 105101. (2021) Abstract
                    • Kim, T.W., Lee, S.J., Jo, J.,  Kim,J.G.,  Ki, H., Kim, C.W., Cho,K.H.,  Choi,J.,  Lee, J.H., Wulff,M.,  Rhee,  Y.M., Ihee, H. Protein folding from heterogeneous unfolded state revealed by time-resolved X-ray solution scattering. Proc Natl Acad Sci USA 117 , 14996-15005 (2020). Abstract

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